PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002101.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 194aa    MW: 20720.8 Da    PI: 3.8817
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002101.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006694114121
                              EEETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                              ++C++Cg ++++   L  H+r
  Itr_sc002101.1_g00009.1  94 FTCEICGARYPTEKALFGHLR 114
                              89*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.9E-894118IPR007087Zinc finger, C2H2
SMARTSM003550.00494116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.97494116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASGKETIPA SSSMGEGTEG SQKAAEGVAP PPSSPLPVPQ PAPVEDRDEE MVVGENEPDA  60
NQGVEGDAPP EAVQEGGDVV VAGEIAPAGQ AGDFTCEICG ARYPTEKALF GHLRCHKDRG  120
WRGAFRPPTF TMEEFAEYQE HLVKPEEEQL REIEAEERAA AGERVVLDVD LNEEVAPVEE  180
LILPDLNLPP PGEE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.13e-10C2H2 family protein